DreEX0073107 @ danRer10
Exon Skipping
Gene
ENSDARG00000015531 | slc4a8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:ZFIN;Acc:ZDB-GENE-131119-88]
Coordinates
chr6:40377628-40383864:+
Coord C1 exon
chr6:40377628-40377763
Coord A exon
chr6:40380310-40380470
Coord C2 exon
chr6:40383676-40383864
Length
161 bp
Sequences
Splice sites
3' ss Seq
TTTCCATTACGTCCTCTCAGGTG
3' ss Score
9.52
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATACTCCATCCCAGAGGGTTCGGTTTATTCTGGGCACTGAGGAGGACGAGGAGCATGTGGCACATGAACTCTTCACAGAGCTTGATGAAATCTGTGTTAAAGAGGGCAAAGATGCAGAGTGGAAAGAAACTGCAAG
Seq A exon
GTGGCTAAAGTTCGAAGAAGATGTGGAGGATGGAGGAGAGAGGTGGAGTAAGCCGTATGTAGCCACTCTCTCTCTCCACAGTCTGTTTGAACTGCGCAGCTGCATCATTAATGGGACCGTCCTGCTGGACATGAAGGCAGGCAGCATTGAGGAAATAGCAG
Seq C2 exon
ATTTGGTGCTTGAAAAACAGGAGACGCCTCATGAACTGGATGACAGTGTGAGAATGAAGGTCCGAGAGGCACTTTTGAAGCGGCATCACCACCAGAATGACAAGAAGAGGAACAACTTGTTGCCTATGGTCAAAACCCTCACAGAAGCCAACAGGAGACATAGTGAAACTCACTTTATGGACAAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015531-'3-5,'3-4,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.326 A=0.036 C2=0.750
Domain overlap (PFAM):
C1:
PF079317=CPT=PD(1.0=2.2)
A:
PF075658=Band_3_cyto=PU(18.1=85.5)
C2:
PF075658=Band_3_cyto=FE(24.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGAGGACGAGGAGCATG
R:
CTCCTGTTGGCTTCTGTGAGG
Band lengths:
257-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]