RnoEX0082878 @ rn6
Exon Skipping
Gene
ENSRNOG00000028879 | Slc4a8
Description
solute carrier family 4 member 8 [Source:RGD Symbol;Acc:735164]
Coordinates
chr7:142427422-142432902:+
Coord C1 exon
chr7:142427422-142427557
Coord A exon
chr7:142428315-142428475
Coord C2 exon
chr7:142432714-142432902
Length
161 bp
Sequences
Splice sites
3' ss Seq
ATCCCTGGCAACGTTCGCAGGTG
3' ss Score
6.4
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
ACACCCCGTCTCAGCGCGTACAGTTCATTCTTGGCACTGAGGAAGATGAGGAGCACGTTCCTCATGAGCTGTTCACAGAGCTGGACGAGATCTGTATGAAAGAGGGGGAAGAAGCCGAATGGAAGGAAACGGCCAG
Seq A exon
GTGGCTGAAGTTTGAAGAGGACGTGGAGGACGGGGGAGAGCGCTGGAGCAAGCCTTACGTGGCCACACTTTCTCTGCACAGCCTGTTTGAGCTGAGGAGCTGCCTCATCAATGGCTCCGTCCTCCTGGACATGCGCGCAAGCAGCATAGAGGAGATCTCAG
Seq C2 exon
ACCTGATCCTGGACCAGCAGGAGCTGCTCCGGGACCTGAGCGACAGCGTGCGGGTTAAGGTGCGGGAAGCCTTGCTGAAGAAGCATCACCATCAGAACGAGAAGAAGAGGAACAACCTCATCCCCATCGTCCGCTCCTTTGCCGAGGTCGGCAAGAAGCAGTCTGACCCGCATTCCATGGACAGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028879-'7-4,'7-3,8-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(18.1=85.5)
C2:
PF075658=Band_3_cyto=FE(24.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGTTCACAGAGCTGGAC
R:
CATGGAATGCGGGTCAGACTG
Band lengths:
250-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]