MmuEX6056569 @ mm10
Exon Skipping
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100783787-100787352:+
Coord C1 exon
chr15:100783787-100783922
Coord A exon
chr15:100784715-100784875
Coord C2 exon
chr15:100787164-100787352
Length
161 bp
Sequences
Splice sites
3' ss Seq
CATGTTGGCAATATTTGCAGGTG
3' ss Score
6.52
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
ACACCCCGTCTCAGCGTGTTCAGTTCATTCTTGGCACTGAGGAAGATGAAGAACATGTGCCTCATGAGCTCTTCACAGAGCTGGACGAGATCTGTATGAAAGAGGGGGAAGATGCTGAGTGGAAGGAGACGGCCAG
Seq A exon
GTGGCTGAAGTTTGAAGAGGATGTGGAGGACGGGGGAGAGCGCTGGAGCAAGCCTTACGTGGCCACGCTCTCTCTGCACAGCCTGTTTGAGCTGAGGAGCTGCCTCATCAACGGCTCTGTGCTTCTGGACATGCGTGCAAGTAGCATAGAGGAGATCTCAG
Seq C2 exon
ACCTGATCCTGGACCAGCAGGAGCTGCTCCGAGACCTGAGCGACAGCGTGAGGGTTAAAGTGCGGGAAGCCCTGCTGAAGAAGCACCACCACCAGAACGAGAGGAGGAGGAACAACCTCATCCCCATCGTCCGCTCCTTCGCTGAGGTTGGCAAGAAGCAGTCTGACCCGCACTCCATGGACAGAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032-'6-13,'6-11,16-13=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.261 A=0.000 C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
PF075658=Band_3_cyto=PU(18.2=85.5)
C2:
PF075658=Band_3_cyto=FE(24.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTCAGCGTGTTCAGTTCA
R:
AGGTTGTTCCTCCTCCTCTCG
Band lengths:
248-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types