Special

GgaEX7011988 @ galGal4

Exon Skipping

Gene
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chrLGE22C19W28_E50C23:865158-866572:-
Coord C1 exon
chrLGE22C19W28_E50C23:866437-866572
Coord A exon
chrLGE22C19W28_E50C23:866197-866357
Coord C2 exon
chrLGE22C19W28_E50C23:865158-865310
Length
161 bp
Sequences
Splice sites
3' ss Seq
ACCCCGAGCGGTGCCCGCAGGTG
3' ss Score
5.86
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
ACACGCCGTCCCAGCGGGTGCAGTTCATCCTCAGCACCGAGGAGGACGAGCAGCACGTCCCTCATGATCTGTTCACCGAACTGGATGAGATCCATGTGAAAGAGGGTGAAGGCACAGAGTGGAAGGAGACAGCGAG
Seq A exon
GTGGCTGAAGTTCGAGGAGGACGTGGAAGATGGCGGCGAGCGCTGGAGCAAACCCTACGTGGCCACGCTCTCCTTGCACAGCCTCTTTGAGCTGAGGAACTGCATCATCAAAGGCACAGTGCTGCTGGATATGTGTGCCAACAGCACCGAGGAGATCGCAG
Seq C2 exon
ATATGATCCTGGACCAGCAGAACCACTCCAGTGAGTTTGATCAGAGCACGCGGGAGAAGGTCCGGGAGGTCCTTCTCAAGAAGCACCACCACCAGAATGAGAAGAAGAGAAACAACCTCCTCCCCATCGTCCTCTCCTTCGCTGACAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423-'1-6,'1-3,3-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

ORF disruption upon sequence exclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.348 A=0.036 C2=0.442
Domain overlap (PFAM):

C1:
NO
A:
PF075658=Band_3_cyto=PU(19.0=85.5)
C2:
PF075658=Band_3_cyto=FE(20.6=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCATCCTCAGCACCGAG
R:
CGATGGGGAGGAGGTTGTTTC
Band lengths:
245-406
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]