BtaEX6020635 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017950 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chr5:28505123-28507496:-
Coord C1 exon
chr5:28507409-28507496
Coord A exon
chr5:28506335-28506481
Coord C2 exon
chr5:28505123-28505223
Length
147 bp
Sequences
Splice sites
3' ss Seq
AGGATTTTTTCTTCTCTTAGATT
3' ss Score
7.28
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GTTTTTGTTTATCCTATTGGGTCCAGTAGGGAAAGGTCAGCAGTATCATGAGATTGGCAGATCCATGGCCACCATCATGACAGATGAG
Seq A exon
ATTTTTCATGATGTGGCTTATAAGGCAAAAGAACGAGATGACCTCCTGGCAGGGATTGATGAGTTCCTAGACCAGGTGACGGTGCTTCCTCCAGGGGAGTGGGACCCCTCCATTCGAATTGAGCCACCCAAAAATGTCCCTTCCCAG
Seq C2 exon
GAGAAAAGGAAAATGCCTGGAGTTCCAAATGGGAACGTTTGCCACATAGAACCGGAGCCACATGGGGGCCACAGCGGGCCAGAGCTTCAGCGCACTGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017950-'15-14,'15-13,16-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.252 C2=0.843
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(7.9=100)
A:
PF075658=Band_3_cyto=PD(9.8=73.5)
C2:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGTTTATCCTATTGGGTCCAGT
R:
CCCAGTGCGCTGAAGCTC
Band lengths:
186-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]