RnoEX0082872 @ rn6
Exon Skipping
Gene
ENSRNOG00000028879 | Slc4a8
Description
solute carrier family 4 member 8 [Source:RGD Symbol;Acc:735164]
Coordinates
chr7:142435302-142437595:+
Coord C1 exon
chr7:142435302-142435389
Coord A exon
chr7:142436430-142436576
Coord C2 exon
chr7:142437495-142437595
Length
147 bp
Sequences
Splice sites
3' ss Seq
AAGTTTTTTCCTCTCTGTAGATT
3' ss Score
9.08
5' ss Seq
CAGGTAATA
5' ss Score
8.55
Exon sequences
Seq C1 exon
GTTTTTGTTTATCTTACTGGGTCCGGTAGGAAAAGGGCAGCAGTACCATGAGATTGGCAGATCCATGGCCACCATCATGACGGATGAG
Seq A exon
ATTTTTCACGATGTGGCGTATAAAGCGAAAGAACGGGATGATCTCCTGGCTGGGATCGATGAGTTCCTGGATCAAGTGACGGTGCTCCCACCAGGGGAGTGGGACCCGTCCATTAGAATTGAGCCACCCAAGAATGTCCCTTCCCAG
Seq C2 exon
GAAAAAAGGAAGATGCCTGGCGTTCCAAACGGAAACATTTGCCACGTAGAACCTGAGCCACATGGGGGACACAGCGGGCCGGAACTTGAGCGGACGGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028879-'12-9,'12-8,13-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.224 C2=0.794
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.2=100)
A:
PF075658=Band_3_cyto=PD(13.8=73.5)
C2:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTTGTTTATCTTACTGGGTCCGGT
R:
CCCCGTCCGCTCAAGTTC
Band lengths:
186-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]