MmuEX6056565 @ mm10
Exon Skipping
Gene
ENSMUSG00000023032 | Slc4a8
Description
solute carrier family 4 (anion exchanger), member 8 [Source:MGI Symbol;Acc:MGI:1928745]
Coordinates
chr15:100789835-100791697:+
Coord C1 exon
chr15:100789835-100789922
Coord A exon
chr15:100790906-100791052
Coord C2 exon
chr15:100791597-100791697
Length
147 bp
Sequences
Splice sites
3' ss Seq
AAGTTCTTTCCTCTCTCTAGATT
3' ss Score
8.6
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GTTTTTGTTTATCTTACTGGGCCCAGTGGGAAAAGGGCAGCAGTACCATGAGATTGGCAGGTCCATGGCCACCATCATGACGGACGAG
Seq A exon
ATTTTTCATGATGTGGCATATAAAGCAAAGGAACGCGATGACCTCCTGGCAGGGATTGACGAGTTCCTGGACCAGGTGACGGTGCTTCCGCCAGGGGAGTGGGACCCATCTATTAGAATTGAGCCACCCAAGAATGTCCCTTCCCAG
Seq C2 exon
GAAAAAAGGAAAATGCCCGGTGTTCCAAACGGAAACGTTTGCCACATAGAACCAGAGCCACATGGGGGGCACAGTGGGCCAGAACTGGAGCGGACTGGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023032-'17-24,'17-21,28-24=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.224 C2=0.794
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.2=100)
A:
PF075658=Band_3_cyto=PD(14.0=73.5)
C2:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTTTGTTTATCTTACTGGGCCCA
R:
CCCAGTCCGCTCCAGTTCT
Band lengths:
187-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types