GgaEX7011991 @ galGal4
Exon Skipping
Gene
ENSGALG00000008423 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chrLGE22C19W28_E50C23:863236-864177:-
Coord C1 exon
chrLGE22C19W28_E50C23:864090-864177
Coord A exon
chrLGE22C19W28_E50C23:863416-863562
Coord C2 exon
chrLGE22C19W28_E50C23:863236-863327
Length
147 bp
Sequences
Splice sites
3' ss Seq
CACTTGTCCCCTACCTGCAGGTT
3' ss Score
10.99
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GTTTCTGTTTGTGTTGTTGGGACCAGAAGGAAAAGCCCATCAGTACCACGAGATCGGCAGGTCCATGGCCACGCTCATGACGGATGAG
Seq A exon
GTTTTTCATGACGTTGCCTACAAAGCCAAGGACCGGGCCGACCTGGTGGCTGGCATCGATGAGTTCCTGGACCAAGTCACGGTGCTGCCACCGGGAGAGTGGGACCCATCGATCCGCATCGAGCCCCCCAAAAACGTCCCTTCGCAG
Seq C2 exon
AAAAAAAGGAAGATGCCCGGAGCTCTGGATGACAATGCTTCTCACAGAAAGCCTGAAAAACACAGCGGCCCTGAACTGGAGAGGACAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.224 C2=0.839
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.7=100)
A:
PF075658=Band_3_cyto=PD(14.6=73.5)
C2:
PF0095516=HCO3_cotransp=PU(1.2=19.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTGTTTGTGTTGTTGGGACC
R:
TCCTGTCCTCTCCAGTTCAGG
Band lengths:
178-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]