DreEX0073108 @ danRer10
Exon Skipping
Gene
ENSDARG00000015531 | slc4a8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:ZFIN;Acc:ZDB-GENE-131119-88]
Coordinates
chr6:40387742-40389094:+
Coord C1 exon
chr6:40387742-40387829
Coord A exon
chr6:40388770-40388916
Coord C2 exon
chr6:40388994-40389094
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTGATTTCTCCATCTTTTAGATT
3' ss Score
10.66
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ATTCTTGTTCATTTTGCTTGGTCCTGATGGAAAAGCCCAGCAGTACCATGAAATTGGTCGCTCCATGGCCACCATCATGACAGATGAG
Seq A exon
ATTTTCCATGATGTTGCATATAAGGCTAAGGACAGGACGGATTTGTTAGCTGGTATAGATGAGTTTCTTGATCAAGTGACAGTTCTGCCCCCAGGGGAATGGGACCCGTCCATACGCATAGAACCTCCTAAATGTGTCCCATCACAG
Seq C2 exon
GAGAAGAGAAAAATGCCGGGAGTGCCGAATGGTACAGCTGTTACTGTTGAGGAAGAGCTACACGCAGAACACCATGGGCCGGAACTGCAGAGAACAGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015531-'9-10,'9-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=0.102 C2=0.706
Domain overlap (PFAM):
C1:
PF075658=Band_3_cyto=FE(11.2=100)
A:
PF075658=Band_3_cyto=PD(13.9=73.5)
C2:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTGTTCATTTTGCTTGGTCCTG
R:
TTCCTGTTCTCTGCAGTTCCG
Band lengths:
186-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]