BtaEX6020718 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29361594-29365048:-
Coord C1 exon
chr5:29364918-29365048
Coord A exon
chr5:29362863-29363031
Coord C2 exon
chr5:29361594-29361764
Length
169 bp
Sequences
Splice sites
3' ss Seq
CTTGCCTTTTTTCATTGCAGTGT
3' ss Score
10.13
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGTCCCACTCTGCGGTCAATGCTCTCTGTAGAGCCATCAAGCTCCAGTGTGAGTTGTACTCCTCTCGGCAGATTGCCATCTGCCTTGACCCTTACTGTGGACTTGGCTTTGCACTCTGGTGTCTCTGCAG
Seq A exon
TGTCTATTCAGGTCACCAGTCCATCTTAATTCCTCCTATGGAGTTGGAAAACAACCTTTTCCTCTGGCTTTCCACGGTCAACCAGTACAAAATCAGAGACACCTTCTGCTCTTATTCAGTGATGGAGCTTTGCACCAAAGGGCTTGGAAACCAGGTGGAGGTGCTGAAG
Seq C2 exon
ACCCGGGGAATCAACCTCTCCTGCATCCGAACGTGTGTGGTGGTGGCTGAGGAGCGGCCCCGCATTGCCCTGCAGCAGTCCTTCTCCAAGCTCTTCAAGGACATCGGTCTGTCCCCGCGGGCTGTCAGCACCACTTTTGGATCCAGAGTCAACGTAGCAATATGTTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246-'35-39,'35-38,36-39=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.0=100)
A:
PF0050123=AMP-binding=FE(11.8=100)
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCAAGCTCCAGTGTGAG
R:
GGATCCAAAAGTGGTGCTGACA
Band lengths:
242-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]