GgaEX6046943 @ galGal3
Exon Skipping
Gene
ENSGALG00000006139 | DIP2B
Description
NA
Coordinates
chrE22C19W28_E50C23:133013-134994:-
Coord C1 exon
chrE22C19W28_E50C23:134864-134994
Coord A exon
chrE22C19W28_E50C23:134141-134309
Coord C2 exon
chrE22C19W28_E50C23:133013-133183
Length
169 bp
Sequences
Splice sites
3' ss Seq
ATTCTCTTTGTTTTTCACAGTGT
3' ss Score
9.42
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATGTCCCACGCAGCAGTGAGTGGCCTTTGCAGGGCCATCAAGCTTCAGTGTGAGCTCTACTCCTCACGGCAGATTGCCATTTGTCTTGACCCCTACTGTGGACTAGGGTTTGTGCTCTGGTGCCTTTGCAG
Seq A exon
TGTGTATTCTGGACACCAGTCAATTTTAATTCCTCCTATGGAGCTGGAATCCAATCTTTCTCTCTGGTTATCTACTGTAAGCCAGCATAAAATAAGGGACACTTTCTGTTCCTATTCAGTCATGGAACTGTGCACAAAGGGACTTGGAAACCAAGTTGAAACGTTAAAG
Seq C2 exon
GCACGAGGAATTAATCTGTCCTGTGTCCGGACGTGTGTGGTTGTTGCAGAGGAACGACCACGAGTTTCTCTCACTCATTCATTCTCGAAACTCTTCAAAGACATTGGCCTGTCATCTCGTGCTGTAAGCACCACCTTTGGATCAAGAGTCAACGTTGCTATCTGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139-'35-38,'35-37,36-38=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.0=100)
A:
PF0050123=AMP-binding=FE(11.8=100)
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGCCATCAAGCTTCAGTG
R:
TCCAAAGGTGGTGCTTACAGC
Band lengths:
243-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]