MmuEX6056478 @ mm9
Exon Skipping
Gene
ENSMUSG00000023026 | Dip2b
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100029891-100033733:+
Coord C1 exon
chr15:100029891-100030021
Coord A exon
chr15:100032619-100032787
Coord C2 exon
chr15:100033563-100033733
Length
169 bp
Sequences
Splice sites
3' ss Seq
CTCCACTTCCTTTTTTGCAGTGT
3' ss Score
7.81
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATGTCCCACTCTGCAGTCAATGCTCTCTGCAGAGCCATCAAGCTGCAGTGCGAATTGTACTCTTCCCGGCAGATCGCCATCTGCCTTGACCCTTACTGTGGACTTGGCTTTGCACTCTGGTGTCTCTGCAG
Seq A exon
TGTGTATTCGGGTCACCAGTCCGTCTTGATCCCTCCTATGGAGCTGGAAAACAACCTTTTCCTCTGGCTCGCCACTGTCAACCAGTACAAGATCAGGGACACCTTCTGCTCCTACTCAGTCATGGAGCTGTGCACTAAAGGGCTGGGGAACCAGGTGGAGGTGCTGAAG
Seq C2 exon
ACCAGAGGGATCAATCTTTCTTGCATCCGGACCTGTGTGGTGGTGGCAGAGGAGCGGCCCCGTGTCAGCCTTCAGCAGTCCTTCTCCAAGCTCTTCAAAGACATCGGTCTGTCCCCTCGAGCTGTCAGCACCACTTTTGGATCCAGAGTCAATGTAGCAATATGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-'37-34,'37-33,38-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.0=100)
A:
PF0050123=AMP-binding=FE(11.8=100)
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTGCAGAGCCATCAAGC
R:
TCCAAAAGTGGTGCTGACAGC
Band lengths:
250-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: