HsaEX6066501 @ hg19
Exon Skipping
Gene
ENSG00000066084 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:29284]
Coordinates
chr12:51122331-51126319:+
Coord C1 exon
chr12:51122331-51122461
Coord A exon
chr12:51125152-51125320
Coord C2 exon
chr12:51126149-51126319
Length
169 bp
Sequences
Splice sites
3' ss Seq
TCTTGTCTCTTTCACTGCAGTGT
3' ss Score
9.12
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
ATGTCCCACTCTGCAGTGAACGCTCTGTGTCGAGCCATCAAGCTCCAGTGTGAGTTGTACTCTTCTCGGCAGATCGCCATCTGCCTTGACCCTTACTGTGGACTTGGCTTCGCGCTCTGGTGTCTCTGCAG
Seq A exon
TGTCTATTCAGGCCACCAGTCTGTCTTAATTCCTCCTATGGAGTTAGAGAACAACCTTTTCCTCTGGCTCTCCACAGTCAACCAGTACAAAATAAGGGACACTTTCTGCTCCTATTCAGTGATGGAGCTCTGCACCAAAGGTCTTGGGAACCAAGTGGAAGTGCTAAAG
Seq C2 exon
ACCAGAGGGATCAACCTCTCCTGCGTCCGGACCTGTGTGGTGGTGGCGGAGGAGAGGCCCCGCGTTGCACTCCAGCAGTCCTTCTCTAAGCTCTTCAAAGACATCGGGCTGTCCCCGCGGGCTGTCAGCACCACTTTTGGATCAAGAGTCAATGTAGCAATATGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000066084-'34-34,'34-33,35-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.0=100)
A:
PF0050123=AMP-binding=FE(11.8=100)
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGTGTCGAGCCATCAAGC
R:
TCCAAAAGTGGTGCTGACAGC
Band lengths:
250-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)