RnoEX0027951 @ rn6
Exon Skipping
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141863868-141867189:+
Coord C1 exon
chr7:141863868-141863998
Coord A exon
chr7:141866088-141866256
Coord C2 exon
chr7:141867019-141867189
Length
169 bp
Sequences
Splice sites
3' ss Seq
TCTCCACTTCTTCTTTGCAGTGT
3' ss Score
9.41
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATGTCCCACTCTGCAGTCAATGCTCTCTGCAGAGCCATCAAGCTCCAGTGCGAGTTGTACTCTTCCCGACAGATCGCCATCTGCCTTGACCCTTACTGCGGACTTGGCTTTGCTCTCTGGTGTCTCTGCAG
Seq A exon
TGTCTATTCGGGTCACCAGTCCGTCTTGATCCCTCCTATGGAGCTGGAGAGCAACCTCTCCCTGTGGCTCGCCACTGTCAATCAGTACAAGATCAGGGACACCTTCTGCTCCTACTCAGTCATGGAGCTTTGTACCAAGGGGCTGGGCAGCCAGGTGGAGGCGCTCAAG
Seq C2 exon
ACCCGAGGGATCAACCTTTCCTGCATCCGAACTTGTGTGGTAGTCGCAGAGGAGCGGCCTCGGGTCACCCTCCAGCAGTCCTTCTCCAAGCTCTTCAAAGACATCGGCCTGTCCCCTCGAGCTGTCAGCACCACTTTTGGGTCCAGGGTCAATGTAGCGATATGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106-'47-47,'47-46,48-47
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.0=100)
A:
PF0050123=AMP-binding=FE(11.8=100)
C2:
PF0050123=AMP-binding=FE(11.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCTGCAGAGCCATCAAGC
R:
GACCCAAAAGTGGTGCTGACA
Band lengths:
252-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]