BtaEX6020722 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005246 | DIP2B
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chr5:29356107-29359685:-
Coord C1 exon
chr5:29359628-29359685
Coord A exon
chr5:29357947-29358021
Coord C2 exon
chr5:29356107-29356284
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTCTTTGATTCTTAGATC
3' ss Score
9.12
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
GGTTCGTCTTGTGGAACGGGGTGCCCCCCAGAGTTTGCTCCTCTCAGAGTCTGGAAAG
Seq A exon
ATCCTACCTGGAGTGAAAGTAGTTATTGTTAATCCAGAGACCAAAGGGCCCGTTGGAGACTCTCACCTGGGAGAG
Seq C2 exon
ATTTGGGTGAACAGTCCCCATACAGCCAGCGGCTATTATACCATCTACGACAGTGAGACTCTGCAAGCTGACCACTTCAACACCCGCCTCAGCTTTGGGGATGCTGCCCAGACCCTCTGGGCTCGGACGGGATACCTGGGTTTTGTCCGCCGGACGGAGCTCACAGCAGCCACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005246-'40-44,'40-43,42-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.080 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.0=100)
A:
PF0050123=AMP-binding=FE(5.0=100)
C2:
PF0050123=AMP-binding=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCAGAGTTTGCTCCTCTCA
R:
GCGGACAAAACCCAGGTATCC
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]