RnoEX0027955 @ rn6
Exon Skipping
Gene
ENSRNOG00000056106 | Dip2b
Description
disco-interacting protein 2 homolog B [Source:RGD Symbol;Acc:1305671]
Coordinates
chr7:141870169-141873535:+
Coord C1 exon
chr7:141870169-141870226
Coord A exon
chr7:141871538-141871612
Coord C2 exon
chr7:141873358-141873535
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATTTCCTCTTTGATTCTCAGATC
3' ss Score
9.57
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
GGTCCGTCTTGTGGAACGAGGTGCCCCCCAGAGTCTCCTGCTTTCTGAGTCTGGAAAG
Seq A exon
ATCTTACCTGGAGTGAAAGTAGTTATTGTGAATCCTGAGACCAAAGGACCTGTTGGAGACTCTCACCTGGGAGAG
Seq C2 exon
ATCTGGGTGAATAGCCCCCACACCGCCAGTGGCTACTACACCATCTACGACAGCGAGACTCTTCAGGCCGACCATTTCAACACCCGTCTGAGCTTTGGAGATGCTGCCCAGACGCTCTGGGCCCGGACAGGGTACCTCGGGTTCGTCCGCAGGACGGAGCTCACCGCAGCCACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056106-'51-52,'51-51,52-52
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.080 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.0=100)
A:
PF0050123=AMP-binding=FE(5.0=100)
C2:
PF0050123=AMP-binding=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCTTGTGGAACGAGGTG
R:
GTCTGGGCAGCATCTCCAAAG
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]