MmuEX0014709 @ mm9
Exon Skipping
Gene
ENSMUSG00000023026 | Dip2b
Description
DIP2 disco-interacting protein 2 homolog B (Drosophila) [Source:MGI Symbol;Acc:MGI:2145977]
Coordinates
chr15:100036828-100040187:+
Coord C1 exon
chr15:100036828-100036885
Coord A exon
chr15:100038189-100038263
Coord C2 exon
chr15:100040010-100040187
Length
75 bp
Sequences
Splice sites
3' ss Seq
ATTTCCTCTTTGATTCTTAGATC
3' ss Score
8.97
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
GGTCCGTCTTGTGGAACGGGGTGCCCCCCAGAGCCTCCTGCTTTCTGAATCTGGAAAG
Seq A exon
ATCTTACCTGGAGTAAAAGTAGTTATTGTCAATCCTGAGACCAAAGGACCTGTTGGAGACTCTCACCTGGGAGAG
Seq C2 exon
ATCTGGGTGAATAGCCCCCATACCGCCAGTGGCTACTATACCATCTACGACAGCGAGACTCTTCAAGCTGATCATTTCAATACCCGTCTGAGCTTTGGAGATGCTGCCCAGACACTCTGGGCCCGGACAGGATACCTCGGGTTTGTCCGCAGGACTGAGCTCACTGCAGCCACTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023026-'43-39,'43-38,44-39
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.080 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.0=100)
A:
PF0050123=AMP-binding=FE(5.0=100)
C2:
PF0050123=AMP-binding=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTCCTGCTTTCTGAATCTGG
R:
AAACCCGAGGTATCCTGTCCG
Band lengths:
170-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: