DreEX0027014 @ danRer10
Exon Skipping
Gene
ENSDARG00000005350 | dip2ba
Description
DIP2 disco-interacting protein 2 homolog Ba (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2305]
Coordinates
chr23:27435037-27437177:-
Coord C1 exon
chr23:27437120-27437177
Coord A exon
chr23:27435317-27435391
Coord C2 exon
chr23:27435037-27435211
Length
75 bp
Sequences
Splice sites
3' ss Seq
TCTTCTGTGCTTTACCTCAGATG
3' ss Score
9.57
5' ss Seq
GAGGTGAAC
5' ss Score
4.07
Exon sequences
Seq C1 exon
AGTCAGGCTGGTGGAGAGAGGAGCTCCTCAGAGTCTGCCGCTGATGGAGTCTGGGACT
Seq A exon
ATGCTTCCTGGAGTGAGAGTTATCATTGTGAACCCAGAGACTAAAGGACCACTAGGAGACTCTCATCTAGGAGAG
Seq C2 exon
ATCTGGGTGAACAGTCCTCATAACGCCAGTGGTTATTATACGATCTATGGTGAGGAGAGCCTGCAGGCAGACCACTTCAACACTCGGCTGAGCTTCGGGGACACTGAAACGCTCTGGGCCAGAACTGGATATCTGGGATTTGTCAAGAGGACTGAGCTGCTGGACGCCAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005350-'44-39,'44-38,45-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.080 C2=0.008
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.0=100)
A:
PF0050123=AMP-binding=FE(5.1=100)
C2:
PF0050123=AMP-binding=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGGCTGGTGGAGAGAG
R:
GTTTCAGTGTCCCCGAAGCTC
Band lengths:
168-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]