GgaEX7011882 @ galGal4
Exon Skipping
Gene
ENSGALG00000006139 | DIP2B
Description
disco-interacting protein 2 homolog B [Source:HGNC Symbol;Acc:HGNC:29284]
Coordinates
chrLGE22C19W28_E50C23:156202-157320:-
Coord C1 exon
chrLGE22C19W28_E50C23:157263-157320
Coord A exon
chrLGE22C19W28_E50C23:156844-156918
Coord C2 exon
chrLGE22C19W28_E50C23:156202-156379
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTTGTGATCTTTAGATT
3' ss Score
9.02
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
AGTACGTCTAGTGGAAAGGGGAGCTCCACAAAGTCTGCTGCTTTCAGAATCTGGGAAG
Seq A exon
ATTTTACCTGGAGTCAAGGTGGTTATTGTTAATCCGGAGACAAAAGGGCCTCTGGGAGATTCTCATCTTGGAGAG
Seq C2 exon
ATTTGGGTGAACAGCCCACACACAGCCAGTGGCTACTACACCATCTACGACAACGAAACCCTTCAAGCCGATCATTTCAACACTCGTCTGAGCTTTGGAGATGCAGCTCAGACGCTTTGGGCTCGGACTGGGTACCTTGGTTTTGTCCGTCGGACAGAGCTTACAGCTGCCAGTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006139-'62-53,'62-52,63-53=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.040 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(4.0=100)
A:
PF0050123=AMP-binding=FE(5.0=100)
C2:
PF0050123=AMP-binding=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTCCACAAAGTCTGCTG
R:
AAACCAAGGTACCCAGTCCGA
Band lengths:
182-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]