BtaEX6020867 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019277 | KCNH3
Description
potassium channel, voltage gated eag related subfamily H, member 3 [Source:HGNC Symbol;Acc:HGNC:6252]
Coordinates
chr5:30447629-30453279:-
Coord C1 exon
chr5:30453080-30453279
Coord A exon
chr5:30452443-30452692
Coord C2 exon
chr5:30447629-30447846
Length
250 bp
Sequences
Splice sites
3' ss Seq
CCACCTGGTGCCACCCGCAGCTG
3' ss Score
7.76
5' ss Seq
TAGGTTTGT
5' ss Score
4.07
Exon sequences
Seq C1 exon
CCCTGATGCACGCGGTGGTGTTTGGGAACGTGACGGCCATCATCCAGCGCATGTACGCCCGCCGCTTTCTGTACCACAGCCGCACCCGCGACCTGCGCGACTACATCCGCATCCACCGCATCCCCAAGCCCCTCAAGCAGCGCATGCTCGAGTACTTCCAGGCGACCTGGGCGGTGAACAACGGTATCGACACCACAGAG
Seq A exon
CTGCTGCAGAGCCTCCCAGACGAGCTCCGCGCTGACATCGCCATGCACCTGCACAAGGAGGTCCTGCAGCTGCCCCTGTTCGAGGCGGCCAGCCGGGGCTGCCTGCGGGCGCTGTCCCTGGCCTTGCGGCCCGCCTTCTGCACGCCGGGCGAGTACCTCATCCACCAGGGCGACGCCCTCCAGGCCCTCTACTTCGTCTGCTCTGGCTCCATGGAGGTGCTCAAGGGCGGAACTGTGCTCGCCATCCTAG
Seq C2 exon
GGAAGGGAGACCTGATCGGCTGTGAGCTGCCCCGGCGTGAGCAGGTGGTCAAGGCCAACGCCGATGTGAAGGGGCTGACGTACTGCGTCCTACAGTGTTTGCAGCTGGCCGGGCTGCATGAGAGCCTGGCACTGTACCCCGAGTTTGCCCCCCGCTTCAGCCGGGGCCTCCGAGGGGAGCTCAGCTACAACCTGGGTGCTGGTGGAGGCCCCGCCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019277-'11-17,'11-14,12-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.123
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.2=14.9)
A:
PF0002724=cNMP_binding=PU(45.5=47.6)
C2:
PF0002724=cNMP_binding=PD(53.4=64.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCATCCAGCGCATGTACG
R:
GTACAGTGCCAGGCTCTCATG
Band lengths:
301-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]