MmuEX6056368 @ mm10
Exon Skipping
Gene
ENSMUSG00000037579 | Kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:MGI Symbol;Acc:MGI:1341723]
Coordinates
chr15:99233249-99238292:+
Coord C1 exon
chr15:99233249-99233448
Coord A exon
chr15:99233867-99234116
Coord C2 exon
chr15:99238075-99238292
Length
250 bp
Sequences
Splice sites
3' ss Seq
CCCCTACTTCCTGCTTGCAGCTG
3' ss Score
10.37
5' ss Seq
TAGGTTCGT
5' ss Score
4.16
Exon sequences
Seq C1 exon
CTCTAATGCATGCAGTGGTGTTTGGGAATGTGACGGCCATCATCCAGCGCATGTATGCTCGCCGCTTTCTGTACCACAGCCGCACTCGTGACCTGCGAGACTACATCCGCATCCACCGCATCCCCAAACCCCTCAAACAACGAATGCTGGAGTACTTCCAAGCCACCTGGGCTGTGAACAATGGCATCGATACCACTGAG
Seq A exon
CTGCTGCAGAGCCTCCCGGATGAGCTTCGTGCAGACATCGCCATGCACCTGCACAAGGAAGTCCTGCAGCTGCCGCTGTTCGAGGCCGCCAGCCGTGGCTGCCTGCGGGCGCTGTCCCTGGCCCTGAGGCCGGCCTTCTGCACGCCGGGCGAGTACCTCATTCACCAAGGCGATGCTCTCCAGGCCCTCTATTTTGTCTGCTCGGGTTCCATGGAGGTCCTCAAAGGTGGCACCGTGCTCGCCATTCTAG
Seq C2 exon
GGAAGGGTGACCTGATCGGCTGCGAGCTGCCCCAGCGGGAACAAGTAGTGAAGGCCAATGCAGACGTGAAGGGGCTGACATACTGCGTCCTACAGTGTCTGCAGTTGGCTGGGCTGCATGAGAGCCTTGCTCTGTACCCTGAGTTTGCCCCACGCTTTAGCCGTGGCCTCCGAGGGGAGCTCAGCTACAACCTGGGAGCTGGTGGAGTCTCTGCGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037579-'13-21,'13-15,20-21=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.0=14.9)
A:
PF0002724=cNMP_binding=PU(45.5=47.6)
C2:
PF0002724=cNMP_binding=PD(53.4=64.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGCTCGCCGCTTTCTGTAC
R:
GGCAAACTCAGGGTACAGAGC
Band lengths:
296-546
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types