DreEX6036555 @ danRer10
Exon Skipping
Gene
ENSDARG00000069560 | kcnh3
Description
potassium voltage-gated channel, subfamily H (eag-related), member 3 [Source:ZFIN;Acc:ZDB-GENE-070912-23]
Coordinates
chr9:28109753-28132357:-
Coord C1 exon
chr9:28132158-28132357
Coord A exon
chr9:28129790-28130039
Coord C2 exon
chr9:28109753-28109967
Length
250 bp
Sequences
Splice sites
3' ss Seq
GCCTCTTTGTCCTTTTGCAGCTT
3' ss Score
11.27
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
CACTCATGCACGCTGCAGTCTTCGGTAACGTGACGGCCATTATCCAGCGGATGTACTCGCGCCGCTCACTCTATCACACTCGAACCAAAGACCTCAAAGACTTCATCCGTGTGCATCGACTGCCCAAAGCCCTTGCGCAGCGCATGTTGGAGTGCTTTCAGACCACATGGTCCGTCAACAATGGCATTGATGTCAGCGAG
Seq A exon
CTTCTGAAGGACTTTCCAGATGAACTGCGGGCCGACATCGCCATGCACCTGAATAAAGAGCTGCTGCAGCTGCCTCTGTTTGAATCGGCCAGTCGAGGGTGCCTGCGATCGCTCTCTCTCATTATCAAAACCTCTTTCTGCGCTCCAGGAGAGTTCCTCATCCGCCAGGGTGACGCTCTGCAGGCCATATACTTTGTCTGCTCGGGCTCCATGGAAGTGCTCAAGGACAACACTGTGCTGGCTATACTGG
Seq C2 exon
GAAAAGGGGATCTGATTGGATCGGATTCGCTAACAAAAGAGCAGGTGATCAAGACTAACGCAAACGTGAAAGCACTGACGTATTGTGACCTGCAGTACATCAGCCTGAAAGGACTGCGAGAAGTGCTGCGCCTCTATCCTGAATACGCCCAGAAATTTGTCAGTGAAATTCAGCATGATCTCACCTATAACCTGCGGGAGGGCAGCGGAGCTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069560-'9-10,'9-9,10-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(3.7=14.9)
A:
PF0002724=cNMP_binding=PU(45.5=47.6)
C2:
PF0002724=cNMP_binding=PD(53.4=65.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGTGACGGCCATTATCCAG
R:
CAGCACTTCTCGCAGTCCTTT
Band lengths:
302-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]