BtaEX6021072 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013155 | COL2A1
Description
Bos taurus collagen, type II, alpha 1 (COL2A1), transcript variant 2, mRNA. [Source:RefSeq mRNA;Acc:NM_001113224]
Coordinates
chr5:32471256-32471848:+
Coord C1 exon
chr5:32471256-32471309
Coord A exon
chr5:32471510-32471554
Coord C2 exon
chr5:32471750-32471848
Length
45 bp
Sequences
Splice sites
3' ss Seq
CATTCTTCTTTGATCTTCAGGGT
3' ss Score
9.28
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
GGACTTCCTGGCCCTCCCGGCCCCCCAGGTGAAGGTGGAAAACCAGGTGACCAG
Seq A exon
GGTGTTCCTGGTGAAGCTGGAGCTCCCGGCCTCGTGGGTCCCAGG
Seq C2 exon
GGTGAACGAGGTTTCCCAGGAGAACGTGGCTCCCCCGGTTCCCAGGGCCTCCAGGGGGCCCGCGGTCTCCCCGGCACTCCTGGCACTGATGGTCCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013155-'35-33,'35-32,36-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(17.5=94.4)
A:
PF0139113=Collagen=FE(14.4=100)
C2:
PF0139113=Collagen=FE(33.0=100),PF0139113=Collagen=PU(2.4=6.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCCTGGCCCTCCC
R:
GACCATCAGTGCCAGGAGTG
Band lengths:
148-193
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]