MmuEX6056173 @ mm10
Exon Skipping
Gene
ENSMUSG00000022483 | Col2a1
Description
collagen, type II, alpha 1 [Source:MGI Symbol;Acc:MGI:88452]
Coordinates
chr15:97984720-97985335:-
Coord C1 exon
chr15:97985282-97985335
Coord A exon
chr15:97985004-97985048
Coord C2 exon
chr15:97984720-97984818
Length
45 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTTGTATTCTCTAGGGT
3' ss Score
11.72
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GGACTTCCTGGCCCTCCCGGTCCCCCAGGTGAAGGTGGAAAGCAAGGTGACCAG
Seq A exon
GGTATTCCTGGTGAAGCTGGAGCTCCTGGCCTTGTGGGTCCTCGG
Seq C2 exon
GGCGAGCGAGGTTTCCCAGGTGAACGTGGCTCTCCTGGTGCTCAGGGCCTTCAGGGTCCCCGAGGCCTCCCTGGCACTCCTGGTACTGATGGTCCCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022483-'47-40,'47-39,48-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCCTGGCCCTCCC
R:
ATCAGTACCAGGAGTGCCAGG
Band lengths:
144-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types