BtaEX6021173 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000018690 | RPAP3
Description
Bos taurus RNA polymerase II associated protein 3 (RPAP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001101930]
Coordinates
chr5:32784462-32786202:+
Coord C1 exon
chr5:32784462-32784583
Coord A exon
chr5:32785911-32785981
Coord C2 exon
chr5:32786101-32786202
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTCTTAAAAATTTGTTTTAGATT
3' ss Score
8.23
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GTATGAAGAGGCTGAAAAAGACTGCACACAAGCTGTCTTGTTAGATGGCTCATATTCTAAAGCTTTTGCCAGAAGAGGAACTGCAAGAACATTTTTGGGAAAGCTAAGTGAGGCCAAACAAG
Seq A exon
ATTTTGAAACTGTTTTACTTTTGGAGCCTGGAAATAAACAGGCAGTAACTGAACTTTCCAAAATTAAAAAG
Seq C2 exon
GAATTAATTGAGAAAGGACACTGGGATGATGTCTTTCTTGATTCTACTCAAAGGCAAAATGTGATAAAACCCATTGATAATCTGCCTCATCTTGGATCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018690-'12-14,'12-13,13-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.088
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(22.4=35.7),PF0051523=TPR_1=PU(64.7=52.4)
A:
PF0051523=TPR_1=PD(32.4=45.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGTCTTGTTAGATGGCTCA
R:
TGAGGCAGATTATCAATGGGTT
Band lengths:
181-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]