RnoEX6033799 @ rn6
Exon Skipping
Gene
ENSRNOG00000053405 | Rpap3
Description
RNA polymerase II associated protein 3 [Source:RGD Symbol;Acc:1303036]
Coordinates
chr7:139175713-139178448:-
Coord C1 exon
chr7:139178327-139178448
Coord A exon
chr7:139175921-139175991
Coord C2 exon
chr7:139175713-139175811
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTTTTAAAATTCTCGTTAGATT
3' ss Score
6.14
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
ATATGAAGAAGCTGAAAGAGACTGCACACAGGCTATCTTACTAGATGGTTCATATTCAAAAGCTTTTGCCAGAAGAGGAACTGCAAGGACATTTTTGGGAAAGATCAATGAGGCCAAGCAAG
Seq A exon
ATTTCGAAACTGTTTTACTTCTGGAACCTGGAAATAAACAGGCAGTGACCGAGCTTTCCAGAATTAAAAAG
Seq C2 exon
GAATTAATTGAGAAAGGACGCTGGGATGATGTCTTTCTTGACTCCACACAGAGGCACAATGTGGTAAAGCCTGTAGACAGTCCTCATCGGGGGTCACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053405-'21-21,'21-20,22-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.364
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(23.5=38.1),PF0051523=TPR_1=PU(64.7=52.4)
A:
PF0051523=TPR_1=PD(32.4=45.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAAAGAGACTGCACACA
R:
TGCCTCTGTGTGGAGTCAAGA
Band lengths:
169-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]