GgaEX1049919 @ galGal3
Exon Skipping
Gene
ENSGALG00000009743 | RPAP3
Description
NA
Coordinates
chr1:33229644-33230518:-
Coord C1 exon
chr1:33230397-33230518
Coord A exon
chr1:33229905-33229975
Coord C2 exon
chr1:33229644-33229760
Length
71 bp
Sequences
Splice sites
3' ss Seq
ATGTGTTATTTTTCACTCAGATT
3' ss Score
7.53
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
ATATGAAGAGGCAGAAAATGACTGTACTCAAGCTCTTCTGTTAGATGCATCTTATTCTAAAGCTTTTGCTAGAAGAGGGGCTGCAAGAGTTGCTCTTGGAAAGCTAAAAGAAGCTATGCAAG
Seq A exon
ATTTTGAAGCTGTTTTGAAGCTGGAACCTGGAAATAAACAAGCAATAAATGAGCTCACTAAAATAAGGAAT
Seq C2 exon
GAGTTAGCTGAGAAGGAACAGTCATGTCATGAAGAATATCCTGCAGTATTGATAAAAGAATCCGAAATAAAAAATATAGTGAAACTTACTCATAATCCATTAAACCTGAAATCAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009743-'16-14,'16-13,17-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.125 C2=0.026
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(23.5=38.1),PF0051523=TPR_1=PU(64.7=52.4)
A:
PF0051523=TPR_1=PD(32.4=45.8)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAAAATGACTGTACTCAAGC
R:
CGGATTCTTTTATCAATACTGCAGGA
Band lengths:
177-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]