HsaEX6066134 @ hg38
Exon Skipping
Gene
ENSG00000005175 | RPAP3
Description
RNA polymerase II associated protein 3 [Source:HGNC Symbol;Acc:HGNC:26151]
Coordinates
chr12:47679493-47681817:-
Coord C1 exon
chr12:47681696-47681817
Coord A exon
chr12:47679704-47679774
Coord C2 exon
chr12:47679493-47679594
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTTTAAAAAATTCGCTTTAGATT
3' ss Score
5.92
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
ATATGAAGAAGCTGAAAAAGACTGCACACAAGCCATTTTATTAGATGGCTCATATTCTAAAGCTTTTGCCAGAAGAGGAACTGCAAGAACATTTTTGGGAAAGCTAAATGAGGCAAAACAAG
Seq A exon
ATTTTGAAACTGTTTTACTTCTGGAACCTGGAAATAAGCAAGCAGTAACTGAACTCTCCAAAATTAAAAAG
Seq C2 exon
GAATTAATTGAGAAAGGACACTGGGATGATGTCTTTCTTGATTCCACACAAAGACAAAATGTGGTAAAACCCATTGATAATCCACCGCATCCTGGATCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000005175-'20-26,'20-24,22-26=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.010 C2=0.471
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(23.5=38.1),PF0051523=TPR_1=PU(64.7=52.4)
A:
PF0051523=TPR_1=PD(32.4=45.8)
C2:
NO
Main Skipping Isoform:
ENST00000005386fB24812
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGACTGCACACAAGCCA
R:
TGGGTTTTACCACATTTTGTCTTTGT
Band lengths:
181-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains