DreEX0062939 @ danRer10
Exon Skipping
Gene
ENSDARG00000087962 | rpap3
Description
RNA polymerase II associated protein 3 [Source:ZFIN;Acc:ZDB-GENE-040426-928]
Coordinates
chr4:962281-964198:+
Coord C1 exon
chr4:962281-962402
Coord A exon
chr4:962486-962556
Coord C2 exon
chr4:964112-964198
Length
71 bp
Sequences
Splice sites
3' ss Seq
TTCATTGTGTTTGCTTGCAGATT
3' ss Score
10.78
5' ss Seq
GCGGTACGT
5' ss Score
10.27
Exon sequences
Seq C1 exon
GTTTGCGGAGGCGGAGCAGGACTGCAGTGCGGCTCTCGCTCTCGACCCCTCATACACTAAAGCGTTCGCCAGACGAGCCACAGCCAGAGCCGCTCTGGGGAAGTGCAGGGACGCCAGAGACG
Seq A exon
ATTTTGAGCAGGTTCTGAAGCTCGAGCCGGGAAACAAACAAGCCATAAGTGAGATCGAGAAGCTCACAGCG
Seq C2 exon
GAGATGCGCAGCAGTCTGGCTCCACAGGAGGACACACTGAGAAAGACCGTCCAGCCCATACACAAGCCTGAGCACCTCAGATCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087962-'14-13,'14-12,15-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.708 C2=1.000
Domain overlap (PFAM):
C1:
PF134141=TPR_11=PD(23.5=38.1),PF134321=TPR_16=PU(48.6=42.9)
A:
PF134321=TPR_16=PD(48.6=75.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGCTCTCGACCCCTCATAC
R:
TGAGGTGCTCAGGCTTGTGTA
Band lengths:
167-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]