BtaEX6022033 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010830 | LRP1
Description
low density lipoprotein receptor-related protein 1 [Source:HGNC Symbol;Acc:HGNC:6692]
Coordinates
chr5:56605494-56608840:-
Coord C1 exon
chr5:56608639-56608840
Coord A exon
chr5:56608166-56608291
Coord C2 exon
chr5:56605494-56605634
Length
126 bp
Sequences
Splice sites
3' ss Seq
CCGTGGCCCCTCCTTCACAGTGG
3' ss Score
7.3
5' ss Seq
TGGGTACGA
5' ss Score
5.84
Exon sequences
Seq C1 exon
ATTGTGTACGAGGGTCCTGAGCTGAACCACGCCTTTGGCCTCTGTCACCACGGCAACTACCTCTTCTGGACTGAGTACCGGAGCGGCAGTGTCTACCGCTTGGAGCGGGGCACAGGAGGCGCAGCCCCCATCGTGACCCTTCTGCGCAGCGAGCGGCCCCCCATCTTTGAGATCCGCATGTATGATGCCCAGCAGCAGCAAG
Seq A exon
TGGGCACCAACAAATGCCGGGTGAACAACGGCGGCTGCAGCAGCCTGTGCCTGGCCACCCCTGGGAGCCGTCAGTGTGCCTGCGCTGAGGACCAGGTGTTGGACGCAGACGGTGTCACTTGTTTGG
Seq C2 exon
CGAACCCATCCTACGTGCCCCCACCCCAGTGCCAGCCTGGCGAGTTCGCCTGCTCCAACAGCCGCTGCATCCAGGAGCGCTGGAAGTGCGACGGGGACAATGACTGCCTGGACAACAGCGACGAGGCCCCCGCCCTCTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010830-'14-18,'14-17,15-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=83.7)
C2:
PF0005713=Ldl_recept_a=WD(100=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTGGACTGAGTACCGGAGC
R:
GCTGTTGTCCAGGCAGTCATT
Band lengths:
258-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]