MmuEX6051944 @ mm10
Exon Skipping
Gene
ENSMUSG00000040249 | Lrp1
Description
low density lipoprotein receptor-related protein 1 [Source:MGI Symbol;Acc:MGI:96828]
Coordinates
chr10:127584613-127588610:-
Coord C1 exon
chr10:127588409-127588610
Coord A exon
chr10:127588069-127588194
Coord C2 exon
chr10:127584613-127584753
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTTCCTGCCCTCTCCTGCAGTGG
3' ss Score
11.05
5' ss Seq
TGGGTATGA
5' ss Score
5.85
Exon sequences
Seq C1 exon
ATTGTATATGAGGGTCCTGAACTGAATCATGCCTTCGGCCTGTGTCACCATGGCAACTACCTCTTTTGGACCGAGTACCGGAGCGGCAGCGTCTACCGCTTGGAACGGGGCGTGGCAGGCGCACCGCCCACTGTGACCCTTCTGCGCAGCGAGAGACCGCCTATCTTTGAGATCCGAATGTACGACGCGCAGCAGCAGCAAG
Seq A exon
TGGGTACCAACAAATGCCGGGTAAATAACGGAGGCTGCAGCAGCCTGTGCCTCGCCACCCCCGGGAGCCGCCAGTGTGCCTGTGCCGAGGACCAGGTGTTGGACACAGATGGTGTCACCTGCTTGG
Seq C2 exon
CGAACCCATCCTACGTGCCCCCACCCCAGTGCCAGCCGGGCGAGTTTGCCTGTGCCAACAACCGCTGCATCCAGGAGCGCTGGAAGTGTGACGGAGACAACGACTGTCTGGACAACAGCGATGAGGCCCCAGCACTGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040249-'38-28,'38-27,39-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=83.7)
C2:
PF0005713=Ldl_recept_a=WD(100=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTTTTGGACCGAGTACCG
R:
CAGTCGTTGTCTCCGTCACAC
Band lengths:
249-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types