DreEX6080792 @ danRer10
Exon Skipping
Gene
ENSDARG00000029146 | lrp1ab
Description
low density lipoprotein receptor-related protein 1Ab [Source:ZFIN;Acc:ZDB-GENE-030131-7126]
Coordinates
chr23:25627628-25629058:-
Coord C1 exon
chr23:25628869-25629058
Coord A exon
chr23:25627888-25628016
Coord C2 exon
chr23:25627628-25627768
Length
129 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTGTGATTTGTGCAGTTA
3' ss Score
6.25
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
ACGGTGTATGAAGGACAGGAGCTGAACCACCCATTCGGCCTGTGCCACCATAAGAACTTCCTGTTTTGGAACGAGTACCGCGGTGGAGGAATCTACAAGCTGGACCAGAACACCAAGAAAGCCACACTGTTACGCAATGAACGACCGCCAATCTATGAAATTCGCACCTATGATGCACAACAACAGCAAA
Seq A exon
TTATAGGCTCTAATGTGTGTCGTGCTAATAATGGTGGCTGCAGCAGTTTGTGCCTTCTGACGCCCACCGGACGATCCTGCGCCTGTGCTGACGACCAGATACTAGACACAGACAACAAGACCTGCAGAG
Seq C2 exon
CAAATCCTTCCTACGTGCCTCCTCCTCAGTGCCAGCCTGGAGAGTTTGCCTGTAAGAATAACCGCTGTATTCAAGAGCGCTGGAAGTGTGATGGAGACAACGACTGTCTGGACAACAGCGATGAGACCCCCGATCTGTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029146-'14-21,'14-20,15-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005812=Ldl_recept_b=PD(35.9=21.9)
A:
PF146701=FXa_inhibition=WD(100=81.8)
C2:
PF0005713=Ldl_recept_a=WD(100=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGCGGTGGAGGAATCTAC
R:
GGTCTCATCGCTGTTGTCCAG
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]