RnoEX0050645 @ rn6
Exon Skipping
Gene
ENSRNOG00000025053 | Lrp1
Description
LDL receptor related protein 1 [Source:RGD Symbol;Acc:1307535]
Coordinates
chr7:70890839-70894527:-
Coord C1 exon
chr7:70894326-70894527
Coord A exon
chr7:70893998-70894123
Coord C2 exon
chr7:70890839-70890979
Length
126 bp
Sequences
Splice sites
3' ss Seq
TGTCCTGCCCTCTCCTGCAGTGG
3' ss Score
10.92
5' ss Seq
TGGGTATGA
5' ss Score
5.85
Exon sequences
Seq C1 exon
ATTGTATACGAGGGTCCTGAACTGAATCACGCCTTCGGCCTGTGTCACCACGGCAACTACCTCTTTTGGACTGAGTATCGGAGCGGCAGTGTCTACCGCTTGGAGCGGGGTGTGGCAGGCGCACAGCCCACTGTGACCCTTCTGCGCAGCGAGCGACCTCCTATCTTTGAGATCCGAATGTACGACGCGCAGCAGCAGCAAG
Seq A exon
TGGGTACCAACAAATGCCGGGTAAATAACGGAGGCTGCAGCAGTCTGTGCCTAGCCACCCCGGGGAGTCGCCAGTGCGCCTGCGCTGAGGACCAGGTGTTGGATGCGGATGGCGTCACCTGCCTGG
Seq C2 exon
CGAACCCATCCTACGTGCCCCCACCCCAGTGCCAGCCGGGCGAGTTTGCCTGTGCCAACAACCGCTGCATCCAGGAGCGCTGGAAGTGTGATGGAGATAACGACTGTCTGGACAACAGTGATGAGGCCCCGGCACTGTGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025053-'24-24,'24-23,26-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF146701=FXa_inhibition=WD(100=83.7)
C2:
PF0005713=Ldl_recept_a=WD(100=81.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCACGGCAACTACCTCTT
R:
ATCTCCATCACACTTCCAGCG
Band lengths:
256-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]