BtaEX6022172 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57156664-57157560:+
Coord C1 exon
chr5:57156664-57156819
Coord A exon
chr5:57156932-57157083
Coord C2 exon
chr5:57157271-57157560
Length
152 bp
Sequences
Splice sites
3' ss Seq
TCTGCCTTCTGTCTTCTCAGACC
3' ss Score
10.85
5' ss Seq
CGGGTACCC
5' ss Score
4.19
Exon sequences
Seq C1 exon
AGATGCGCTCTGGCTGGTGGTGGATCCGAGATCCTGAGACATTGGATGCCACGCTCAAGGCCTTGCACCCCCGAGGCATCCGAGAGAAAGCACTTCACAAACACCTAAACAAGCACAGGGACTTCTTACAGGAAGTCTGCCTACGGCCCTCAACAG
Seq A exon
ACCCCATCTTTGAGCCCAGTCAGCTACCTGCCTTTGAAGAAGGGATCGTGAGCTGGACCCCCAAAGAGAAGACATATGAGACAGACCTGGCTGTCCTTCAGTGGGTGGAGGAGCTGGAACAGCGGGTGATCCTGTCTGATCTGCAGATTCGG
Seq C2 exon
GGCTGGACATGTCCCAGCCCAGACTCTACTCGTGAAGACTTGGCCTACTGTGAGCACCTAGCTGATTCCCAGGAGGATATCACCTGGCGGGGTCGAGGCAAGGAAGGTCTGGCACCCCAGCGTAAAACTACCAACCCCCTGGACCTGGCAGTGATGCGACTTGCTGCCCTGGAGCAGAATGTGGAGCGGCGGTACCTGCGGGAGCCCCTGTGGCCAGCTCATGAGGTTGTGCTGGAGAAGGCCCTGCTCAGCACGCCCAGTAGTGCCCCACAGTGTACGCCTACAGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840-'34-40,'34-39,36-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=0.098 C2=0.134
Domain overlap (PFAM):
C1:
PF156141=WHIM3=WD(100=79.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGAGACATTGGATGCCACG
R:
GTAGTTTTACGCTGGGGTGCC
Band lengths:
255-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]