HsaEX6067202 @ hg19
Exon Skipping
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:962]
Coordinates
chr12:56993985-56994882:-
Coord C1 exon
chr12:56994727-56994882
Coord A exon
chr12:56994465-56994616
Coord C2 exon
chr12:56993985-56994274
Length
152 bp
Sequences
Splice sites
3' ss Seq
TCTGCCACCTCTCTTCTCAGACC
3' ss Score
9.86
5' ss Seq
CGGGTATGC
5' ss Score
7.73
Exon sequences
Seq C1 exon
AGATGTGCTCAGGCTGGTGGTGGATACGAGATCCTGAGATGTTGGATGCCATGCTCAAGGCCCTACACCCCCGAGGTATCCGGGAGAAGGCACTTCACAAACACCTTAACAAGCACAGGGACTTCTTGCAGGAAGTCTGCCTGCGGCCCTCAGCTG
Seq A exon
ACCCCATCTTTGAGCCCAGGCAACTACCTGCCTTTCAAGAAGGGATTATGAGCTGGTCCCCCAAAGAGAAGACATACGAGACAGACCTAGCAGTGCTTCAATGGGTAGAGGAGCTGGAGCAGCGGGTTATCATGTCTGATCTGCAGATTCGG
Seq C2 exon
GGCTGGACATGTCCTAGCCCAGACTCTACCCGTGAAGACTTGGCCTACTGTGAGCACCTCTCCGACTCCCAGGAGGATATCACCTGGCGAGGTCGGGGCAGGGAGGGACTGGCACCTCAGCGTAAAACTACCAACCCTTTGGACCTGGCTGTGATGCGGCTGGCTGCCCTGGAACAGAATGTAGAACGGCGGTACCTGCGGGAGCCCCTCTGGCCAACTCATGAGGTTGTGCTGGAGAAGGCCCTGCTTAGCACACCTAATGGTGCCCCTGAGGGCACCACTACAGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108-'29-34,'29-33,30-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.020 C2=0.237
Domain overlap (PFAM):
C1:
PF156141=WHIM3=WD(100=79.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGATGCCATGCTCAAGG
R:
AGTTTTACGCTGAGGTGCCAG
Band lengths:
246-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)