MmuEX6052072 @ mm9
Exon Skipping
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127561163-127562238:+
Coord C1 exon
chr10:127561163-127561318
Coord A exon
chr10:127561391-127561542
Coord C2 exon
chr10:127561949-127562238
Length
152 bp
Sequences
Splice sites
3' ss Seq
AGACCACTCTCTCTTCCCAGATC
3' ss Score
9.72
5' ss Seq
CGGGTACCT
5' ss Score
4.35
Exon sequences
Seq C1 exon
AGATGTGCTCGGGCTGGTGGTGGATCCGAGACCCTGAGACACTGGATGTCCTGCTCAAGGCACTGCATCCCCGAGGCATCCGGGAGAAGGCGCTTCACAAACATCTTAGCAAGCACAAGGACTTTTTGCAGGAAGTTTGTTTACAGCCCTTAACTG
Seq A exon
ATCCCATCTTTGAGCCTAATGAGCTCCCTGCCTTGGAAGAAGGCGTTATGAGCTGGTCCCCCAAAGAGAAGACGTACGAGACAGACCTAGCTGTGCTCCAGTGGGTGGAGGAGCTGGAGCAGCGGGTTGTCCTCTCCGATCTGCAGATTCGG
Seq C2 exon
GGCTGGACATGCCCTACCCCAGACTCCACCAGAGAAGACTTGACCTACTGTGAGCATCTGCCTGACTCCCCGGAGGATATCCCTTGGAGGGGTCGGGGCAGGGAAGGAACAGTACCTCAGCGGCAGAACAACAACCCTCTGGACCTCGCTGTGATGCGATTGGCTGTTCTGGAGCAAAATGTGGAGCGGCGGTACTTGCGGGAGCCCCTCTGGGCAGCCCATGAGGTGGTAGTGGAGAAGGCCCTACTGAGCACACCCAATGGTGCCCCTGATGGCACCTCAACTGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-'36-43,'36-42,37-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.098 C2=0.351
Domain overlap (PFAM):
C1:
PF156141=WHIM3=WD(100=79.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGGCGCTTCACAAACA
R:
TCCAGAACAGCCAATCGCATC
Band lengths:
247-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: