DreEX6079020 @ danRer10
Exon Skipping
Gene
ENSDARG00000102974 | baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
Coordinates
chr23:6753058-6758162:-
Coord C1 exon
chr23:6758007-6758162
Coord A exon
chr23:6756469-6756629
Coord C2 exon
chr23:6753058-6753123
Length
161 bp
Sequences
Splice sites
3' ss Seq
GAGTTGGTTTGTTTTTTCAGATC
3' ss Score
8.28
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGATGGTGAAGGGCTGGTGGTGGATCAGAGAACCAGAGGAGCTGACGGCCATTCTGAGCGCTCTTCACCCGCGGGGCATTCGAGAGAAGATGCTTCACAAACACCTCAGTAAACACATGGAGTATCTAGCCGAGGTCTGCACACGCTCTGTAAACG
Seq A exon
ATCCGATCTTCCAGATGAAGGTGGAGGACGGGGATGCCCTGCAGGAGGTGAGTAAGCAGGAGTGGCAGGAGCAGGAGCGGGTGCTGCAGCTGGACATCAGTGTTCTCCAGTGGGTGGAGGACCTGGAGCAGAGGGTGGTCGGTGCAGACCTGCAGCTCAAG
Seq C2 exon
GTGGCTATTCCCAATGCAGAGAATGAAACTGAAGCTGGTCAGGAATCATCAAACACACAGTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102974-'31-39,'31-37,32-39=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.046 C2=0.864
Domain overlap (PFAM):
C1:
PF156141=WHIM3=WD(100=73.6)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGTGAAGGGCTGGTGG
R:
AACTGTGTGTTTGATGATTCCTGAC
Band lengths:
218-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]