RnoEX0014171 @ rn6
Exon Skipping
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2545617-2546788:+
Coord C1 exon
chr7:2545617-2545772
Coord A exon
chr7:2545849-2546000
Coord C2 exon
chr7:2546499-2546788
Length
152 bp
Sequences
Splice sites
3' ss Seq
ATGGACTACTCTCTTCCTAGACC
3' ss Score
6.66
5' ss Seq
CGGGTACCT
5' ss Score
4.35
Exon sequences
Seq C1 exon
ATATGTGCTCAGGCTGGTGGTGGATCCGAGATCCTGAGACACTGGATGTCCTGCTCAAGGCGCTGCATCCCCGAGGCATCCGGGAGAAGGCGCTTCACAAACATCTTAGTAAGCACAAGGACTTTTTGCAGGAGGTTTGTTTGCAGCCCTTAACTG
Seq A exon
ACCCCATCTTTGAGCCCAGTCAGCTGCCTGCCTTGGAAGAAGGAATTATGAGTTGGTCCCCCAAAGAGAAAACTTTCGAGACAGACCTGGCTGTGCTTCAGTGGGTGGAGGAGCTAGAACGGCGAGTCGTCCTCTCTGATCTGCAGATTCGG
Seq C2 exon
GGCTGGACATGCCCTAGTCCAGACTCCACCAGAGAAGACTTGACCTACTGTGAGCATCTGCCTGACTCTCAGGAGGACATCCCTTGGAGGGGTCGGGGCAGGGAAGGAGCAGTGCCTCAGCGGCAGAACACCAACCCTCTGGACCTCGCTGTGATGCGATTGGCTGTTCTGGAGCAAAACGTGGAGCGGCGGTACTTGCGGGAGCCTTTGTGGGCAGCTCACGAGGTGGTAGTGGAGAAGGCCCTCCTGAGCACACCCAGTGGTGAGCCTGACAGTGCCACGACTGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881-'35-42,'35-41,36-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.361
Domain overlap (PFAM):
C1:
PF156141=WHIM3=WD(100=79.2)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGGCGCTTCACAAACA
R:
TCCAGAACAGCCAATCGCATC
Band lengths:
247-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]