BtaEX6022195 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017830 | RBMS2
Description
Bos taurus RNA binding motif, single stranded interacting protein 2 (RBMS2), mRNA. [Source:RefSeq mRNA;Acc:NM_001034365]
Coordinates
chr5:57175205-57182860:-
Coord C1 exon
chr5:57182769-57182860
Coord A exon
chr5:57181192-57181349
Coord C2 exon
chr5:57175205-57175284
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTTCACTTTTATTTCCATAGCAA
3' ss Score
8.72
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GCTATGGCTTTGTGGACTTCGACAGTCCTTCAGCAGCACAGAAAGCAGTTACAGCACTGAAGGCCAGTGGTGTACAAGCGCAGATGGCAAAG
Seq A exon
CAACAGGAGCAGGACCCCACGAATTTGTACATCTCAAACCTCCCGCTGTCAATGGATGAGCAAGAACTGGAGGGAATGCTGAAGCCCTTTGGCCAGGTTATCTCCACTAGAATCCTTCGAGACACCAGTGGGACCAGCAGAGGGGTTGGCTTTGCCAG
Seq C2 exon
GATGGAGTCCACAGAGAAGTGTGAAGCCATCATCACCCACTTTAATGGAAAATATATTAAGACACCCCCTGGAGTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017830-'14-10,'14-8,18-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=0.377 C2=0.143
Domain overlap (PFAM):
C1:
PF062597=Abhydrolase_8=FE(27.3=100),PF0007617=RRM_1=PD(38.8=83.9)
A:
PF062597=Abhydrolase_8=PD(9.1=18.9),PF0007617=RRM_1=PU(65.7=83.0)
C2:
PF0007617=RRM_1=PD(32.8=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGGCTTTGTGGACTTCGA
R:
GGTACTCCAGGGGGTGTCTTA
Band lengths:
170-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]