DreEX6080850 @ danRer10
Exon Skipping
Gene
ENSDARG00000056150 | rbms2b
Description
RNA binding motif, single stranded interacting protein 2b [Source:ZFIN;Acc:ZDB-GENE-040801-51]
Coordinates
chr23:25818959-25830364:+
Coord C1 exon
chr23:25818959-25819050
Coord A exon
chr23:25830041-25830198
Coord C2 exon
chr23:25830285-25830364
Length
158 bp
Sequences
Splice sites
3' ss Seq
ATACTTTTTGTTCTTTGCAGCAA
3' ss Score
9.85
5' ss Seq
CAGGTATCC
5' ss Score
7.91
Exon sequences
Seq C1 exon
GCTATGGCTTTGTGGATTTCGACAGCCCGGCCTCTGCACAGAAAGCAGTGACAGCGCTAAAGGCCAGTGGAGTTCAGGCTCAGATGGCAAAG
Seq A exon
CAACAGGAACAGGACCCCACCAATCTGTACATCTCCAATCTGCCTCTGTCTATGGACGAACAGGAGTTAGAGAGCATGCTCAAGCCCTTCAGCCAGGTCATCTCCACACGTATCTTACGGGACGCAAACGGCACCAGCCGCGGAGTGGGTTTCGCCAG
Seq C2 exon
GATGGAATCGACTGAAAAATGTGAAGCCATCATTCAACATTTTAATGGCAAATACATCAAGACTCCTCCTGGAGTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056150-'3-6,'3-4,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=0.377 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(38.8=83.9)
A:
PF0007617=RRM_1=PU(65.7=83.0)
C2:
PF0007617=RRM_1=PD(32.8=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGGCTTTGTGGATTTCGAC
R:
AGGAGGAGTCTTGATGTATTTGCC
Band lengths:
162-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]