GgaEX6042606 @ galGal4
Exon Skipping
Gene
ENSGALG00000011132 | RBMS1
Description
RNA-binding motif, single-stranded-interacting protein 1 [Source:RefSeq peptide;Acc:NP_990355]
Coordinates
chr7:21231198-21246113:+
Coord C1 exon
chr7:21231198-21231289
Coord A exon
chr7:21243403-21243560
Coord C2 exon
chr7:21246034-21246113
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTATTTTATTTCAGCAA
3' ss Score
8.71
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GTTATGGTTTTGTGGACTTCGACAGCCCAGCAGCTGCTCAGAAGGCAGTTTCTGCTCTAAAGGCTAGTGGAGTCCAGGCACAAATGGCAAAG
Seq A exon
CAACAAGAACAGGATCCAACAAATTTATACATTTCCAATTTGCCACTTTCAATGGATGAGCAGGAGCTTGAGAACATGCTTAAGCCTTTTGGGCAGGTTATCTCTACGAGGATATTGCGTGACTCGAGTGGAACAAGCCGTGGTGTTGGCTTTGCCAG
Seq C2 exon
GATGGAATCAACAGAAAAATGTGAAGCAGTGATTGCTCATTTTAACGGAAAATTCATAAAGACACCAGCAGGAGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011132-'18-15,'18-14,26-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.161 A=0.176 C2=0.024
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(38.8=83.9)
A:
PF0007617=RRM_1=PU(66.7=83.0),PF072716=Cytadhesin_P30=PU(0.6=1.9)
C2:
PF0007617=RRM_1=PD(31.8=75.0),PF072716=Cytadhesin_P30=PU(16.7=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGTTTTGTGGACTTCGACAGC
R:
CAGAAACTCCTGCTGGTGTCT
Band lengths:
170-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]