GgaEX6042606 @ galGal3
Exon Skipping
Gene
ENSGALG00000011132 | O73664_CHICK
Description
NA
Coordinates
chr7:23319772-23334687:+
Coord C1 exon
chr7:23319772-23319863
Coord A exon
chr7:23331977-23332134
Coord C2 exon
chr7:23334608-23334687
Length
158 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTTATTTTATTTCAGCAA
3' ss Score
8.71
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GTTATGGTTTTGTGGACTTCGACAGCCCAGCAGCTGCTCAGAAGGCAGTTTCTGCTCTAAAGGCTAGTGGAGTCCAGGCACAAATGGCAAAG
Seq A exon
CAACAAGAACAGGATCCAACAAATTTATACATTTCCAATTTGCCACTTTCAATGGATGAGCAGGAGCTTGAGAACATGCTTAAGCCTTTTGGGCAGGTTATCTCTACGAGGATATTGCGTGACTCGAGTGGAACAAGCCGTGGTGTTGGCTTTGCCAG
Seq C2 exon
GATGGAATCAACAGAAAAATGTGAAGCAGTGATTGCTCATTTTAACGGAAAATTCATAAAGACACCAGCAGGAGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011132-'9-11,'9-10,16-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.236 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(38.8=83.9)
A:
PF0007617=RRM_1=PU(66.7=83.0),PF072716=Cytadhesin_P30=PU(0.6=1.9)
C2:
PF0007617=RRM_1=PD(31.8=75.0),PF072716=Cytadhesin_P30=FE(16.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGTTTTGTGGACTTCGACAGC
R:
CAGAAACTCCTGCTGGTGTCT
Band lengths:
170-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]