DreEX6038716 @ danRer10
Exon Skipping
Gene
ENSDARG00000103823 | RBMS1 (2 of 2)
Description
RNA binding motif, single stranded interacting protein 1 [Source:HGNC Symbol;Acc:HGNC:9907]
Coordinates
chr9:52207443-52225580:+
Coord C1 exon
chr9:52207443-52207534
Coord A exon
chr9:52223618-52223775
Coord C2 exon
chr9:52225471-52225580
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTTTCTCCCAACAGCAA
3' ss Score
11.38
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTTACGGTTTCGTGGATTTCGACAGTCCTGCAGCGGCTCAAAAAGCAGTCAGTGCTCTGAAGACCAGCGGCGTTCAGGCCCAGATGGCCAAG
Seq A exon
CAACAAGAGCAGGACCCGACTAACCTGTACATCTCTAACCTGCCGTTAACCATGGATGAGCAGGAGTTGGAGGCCATGCTGAAGCCCTTCGGTCAGGTCGTCTCCACACGAATACTCCGAGACACCAACGGGGCCAGTCGAGGGGTCGGATTCGCAAG
Seq C2 exon
GATGGAGTCAACAGAGAAATGTGAAGCCGTCATCTCTCACTTCAATGGGAAGTTCCTCAAAACACCAGCTGGAGTTATGGGTAAGTTCATGTCTGAGTGAACTTTAATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103823-'9-7,'9-6,10-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.355 A=0.189 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(39.7=87.1)
A:
PF0007617=RRM_1=PU(66.7=83.0)
C2:
PF0007617=RRM_1=PD(31.8=61.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTTTCGTGGATTTCGACAG
R:
TAAAGTTCACTCAGACATGAACTTAC
Band lengths:
194-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]