MmuEX6101555 @ mm10
Exon Skipping
Gene
ENSMUSG00000026970 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:MGI Symbol;Acc:MGI:1861774]
Coordinates
chr2:60779731-60792780:-
Coord C1 exon
chr2:60792689-60792780
Coord A exon
chr2:60781861-60782018
Coord C2 exon
chr2:60779731-60779810
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCTGCTCTGCCTTAGCAA
3' ss Score
6.63
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTATGGTTTTGTTGACTTTGACAGTCCTGCAGCAGCCCAGAAAGCTGTCTCCGCCCTGAAGGCGAATGGAGTCCAGGCTCAGATGGCAAAG
Seq A exon
CAACAGGAACAAGATCCTACCAACCTGTACATTTCTAACCTGCCGCTGTCCATGGATGAGCAGGAACTTGAAAATATGCTCAAACCCTTTGGACAAGTTATTTCTACAAGGGTCCTACGTGATTCCAGTGGTGCCAGCCGTGGTGTTGGCTTTGCCAG
Seq C2 exon
GATGGAATCAACGGAAAAATGCGAAGCTGTAATTGGTCATTTTAATGGAAAATTCATCAAGACCCCACCAGGAGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026970-'31-23,'31-20,35-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.312 A=0.340 C2=0.071
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(37.9=80.6)
A:
PF0007617=RRM_1=PU(65.7=83.0)
C2:
PF0007617=RRM_1=PD(32.8=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTTTTGTTGACTTTGACAGT
R:
CTCCTGGTGGGGTCTTGATGA
Band lengths:
163-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types