BtaEX6009553 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005180 | RBMS1
Description
Bos taurus RNA binding motif, single stranded interacting protein 1 (RBMS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001035361]
Coordinates
chr2:36142090-36153561:+
Coord C1 exon
chr2:36142090-36142181
Coord A exon
chr2:36151419-36151576
Coord C2 exon
chr2:36153482-36153561
Length
158 bp
Sequences
Splice sites
3' ss Seq
AATTCTCTGTTCCATTTTAGCAA
3' ss Score
8.63
5' ss Seq
TAGGTGAGC
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTTATGGTTTTGTTGACTTTGACAGTCCTGCAGCAGCTCAGAAGGCTGTGTCTGCCCTGAAGGCAAGTGGGGTTCAAGCTCAAATGGCAAAG
Seq A exon
CAACAGGAACAAGATCCTACCAACTTGTATATTTCTAATTTGCCACTGTCCATGGATGAGCAAGAACTTGAAAATATGCTGAAACCATTTGGACAAGTGATTTCTACAAGGATACTACGCGATTCCAGTGGGACAAGTCGTGGTGTTGGCTTTGCTAG
Seq C2 exon
GATGGAATCAACAGAAAAGTGTGAAGCTGTTATTGGTCATTTTAATGGAAAATTCATTAAGACACCACCCGGAGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005180-'8-9,'8-7,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=0.396 C2=0.071
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(38.8=83.9)
A:
PF0007617=RRM_1=PU(65.7=83.0)
C2:
PF0007617=RRM_1=PD(32.8=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTATGGTTTTGTTGACTTTGACAGT
R:
AGAAACTCCGGGTGGTGTCTT
Band lengths:
171-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]