RnoEX6017030 @ rn6
Exon Skipping
Gene
ENSRNOG00000008482 | Rbms1
Description
RNA binding motif, single stranded interacting protein 1 [Source:RGD Symbol;Acc:1307777]
Coordinates
chr3:46829991-46842421:-
Coord C1 exon
chr3:46842330-46842421
Coord A exon
chr3:46831857-46832014
Coord C2 exon
chr3:46829991-46830070
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCTGTTCTGCCTTAGCAA
3' ss Score
7.61
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTTATGGATTTGTTGACTTTGACAGTCCTGCAGCAGCCCAGAAAGCTGTCTCCGCCCTGAAGGCGAGTGGAGTCCAGGCTCAGATGGCAAAG
Seq A exon
CAACAGGAACAAGATCCTACCAACCTGTACATTTCTAACCTGCCACTGTCCATGGATGAACAAGAACTTGAAAATATGCTCAAACCCTTTGGACAAGTTATTTCTACAAGGGTCCTGCGTGATTCCAGTGGTACCAGCCGTGGTGTTGGCTTTGCCAG
Seq C2 exon
GATGGAATCAACGGAAAAATGCGAAGCTGTAATTGGTCATTTTAATGGAAAATTCATCAAGACCCCACCAGGAGTTTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008482-'13-11,'13-9,14-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=0.453 C2=0.071
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(38.8=83.9)
A:
PF0007617=RRM_1=PU(65.7=83.0)
C2:
PF0007617=RRM_1=PD(32.8=78.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTATGGATTTGTTGACTTTGACAGT
R:
CTCCTGGTGGGGTCTTGATGA
Band lengths:
166-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]