DreEX0061376 @ danRer10
Exon Skipping
Gene
ENSDARG00000074023 | rbms1a
Description
RNA binding motif, single stranded interacting protein 1a [Source:ZFIN;Acc:ZDB-GENE-030131-4967]
Coordinates
chr11:10952990-10956505:+
Coord C1 exon
chr11:10952990-10953081
Coord A exon
chr11:10956139-10956296
Coord C2 exon
chr11:10956426-10956505
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTTATGTTTTCTGAATATAGCAA
3' ss Score
4.57
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GATATGGGTTTGTGGATTTCGACAGTCCCGTGTCCGCACAAAAGGCCGTCGCAGCACTGAAGACCAACGGAGTTCAGGCTCAGATGGCCAAG
Seq A exon
CAACAGGAGCAGGACCCGACTAACCTGTACCTCTCCAACCTGCCCGTGTCCATGGATGAGCAGGAGCTTGAAAACCTCCTCAAACCCTTTGGACAGGTCGTGTCCACCCGAATTCTGCGCGACACTAATGGAATGAGCCGGGGGGTGGGCTTTGCCAG
Seq C2 exon
GATGGAGTCGACAGAGAAGTGTGATGCCGTGATCTCTCACTTCAACGGGAAATTCATTAAGTCCTCTTCTGGGATGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074023-'9-6,'9-4,10-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.290 A=0.245 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(38.8=83.9)
A:
PF0007617=RRM_1=PU(64.7=83.0)
C2:
PF0007617=RRM_1=PD(33.8=82.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGGTTTGTGGATTTCGACAGT
R:
CTAGCATCCCAGAAGAGGACT
Band lengths:
170-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]