GgaEX1002586 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr2:39931933-40049363:+
Coord C1 exon
chr2:39931933-39932024
Coord A exon
chr2:40039242-40039399
Coord C2 exon
chr2:40049284-40049363
Length
158 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCATTTTGTCACAGCAA
3' ss Score
8.31
5' ss Seq
CAGGTGAAA
5' ss Score
5.07
Exon sequences
Seq C1 exon
GTTATGGTTTTGTAGATTTTGACAGCCCGGCAGCAGCACAGAAAGCAGTAGCATCTCTCAAAGCAAATGGCGTGCAAGCGCAGATGGCAAAG
Seq A exon
CAACAAGAGCAAGATCCCACAAATCTATACATCTCAAATTTACCTGTTTCCATGGATGAGCAGGAACTGGAGAACATGCTGAAACCTTTTGGACATGTCATTTCCACCAGAATATTAAGAGACGCAAATGGAGTCAGCAGAGGAGTTGGCTTTGCCAG
Seq C2 exon
AATGGAGTCTACAGAAAAATGTGAAGTAGTAATTCAGCATTTTAATGGCAAATATCTGAAAACCCCGCCTGGTCTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011439-'5-10,'5-9,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.415 C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
PF0007617=RRM_1=PU(65.7=83.0)
C2:
PF0007617=RRM_1=PD(32.8=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTATGGTTTTGTAGATTTTGACAGC
R:
GGTAGACCAGGCGGGGTTTTC
Band lengths:
170-328
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]