MmuEX6069612 @ mm9
Exon Skipping
Gene
ENSMUSG00000039607 | Rbms3
Description
RNA binding motif, single stranded interacting protein [Source:MGI Symbol;Acc:MGI:2444477]
Coordinates
chr9:116714531-116868677:-
Coord C1 exon
chr9:116868586-116868677
Coord A exon
chr9:116731857-116732014
Coord C2 exon
chr9:116714531-116714610
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTTTCTTCCCCTAGCAA
3' ss Score
9.16
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTTATGGTTTTGTAGATTTTGATAGTCCTGCAGCCGCACAGAAAGCAGTGGCGTCCTTGAAGGCAAATGGCGTGCAAGCACAGATGGCCAAG
Seq A exon
CAACAAGAGCAAGACCCTACGAATCTATACATCTCAAACCTTCCCATCTCCATGGATGAGCAGGAGCTGGAGAACATGCTAAAGCCCTTTGGACACGTGATATCCACCAGAATCCTGAGGGATGCTAACGGAGTCAGCAGGGGCGTTGGCTTTGCCAG
Seq C2 exon
AATGGAGTCTACGGAAAAATGTGAAGTGGTGATTCAACATTTTAATGGAAAATATCTGAAAACACCACCAGGCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039607-'7-11,'7-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.330 C2=0.083
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(37.9=80.6)
A:
PF0007617=RRM_1=PU(65.7=83.0)
C2:
PF0007617=RRM_1=PD(32.8=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGATTTTGATAGTCCTGCAGCC
R:
CTGGGATGCCTGGTGGTGTTT
Band lengths:
162-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: