MmuEX6069612 @ mm10
Exon Skipping
Gene
ENSMUSG00000039607 | Rbms3
Description
RNA binding motif, single stranded interacting protein [Source:MGI Symbol;Acc:MGI:2444477]
Coordinates
chr9:116805413-116959559:-
Coord C1 exon
chr9:116959468-116959559
Coord A exon
chr9:116822739-116822896
Coord C2 exon
chr9:116805413-116805492
Length
158 bp
Sequences
Splice sites
3' ss Seq
GTTTCTTTTTCTTCCCCTAGCAA
3' ss Score
9.16
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTTATGGTTTTGTAGATTTTGATAGTCCTGCAGCCGCACAGAAAGCAGTGGCGTCCTTGAAGGCAAATGGCGTGCAAGCACAGATGGCCAAG
Seq A exon
CAACAAGAGCAAGACCCTACGAATCTATACATCTCAAACCTTCCCATCTCCATGGATGAGCAGGAGCTGGAGAACATGCTAAAGCCCTTTGGACACGTGATATCCACCAGAATCCTGAGGGATGCTAACGGAGTCAGCAGGGGCGTTGGCTTTGCCAG
Seq C2 exon
AATGGAGTCTACGGAAAAATGTGAAGTGGTGATTCAACATTTTAATGGAAAATATCTGAAAACACCACCAGGCATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039607-'20-30,'20-27,29-30
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.258 A=0.291 C2=0.078
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(37.9=80.6)
A:
PF0007617=RRM_1=PU(65.7=83.0)
C2:
PF0007617=RRM_1=PD(32.8=78.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAGATTTTGATAGTCCTGCAGCC
R:
CTGGGATGCCTGGTGGTGTTT
Band lengths:
162-320
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types